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Initial Commit
2023-05-01 13:06:14 +00:00
### A Pluto.jl notebook ###
# v0.19.23
using Markdown
using InteractiveUtils
# ╔═╡ c649e044-d418-11ed-16c7-7171aa17ea3b
begin
using DataFrames
using CSV
using PyCall
using Conda
using Dates
using Plots
using Statistics
end
# ╔═╡ 9fee4ffb-83c0-46df-b84a-ef902a5e99ab
md"""
# Jake's Ultramarathon Training
Welcome to a typical Pluto notebook! This typically starts with
- Packages needed
- Initial data exploration
"""
# ╔═╡ 8bf03425-5697-4817-93fa-9519d9f184bd
md"""
## Packages Installed
- Pluto maintains it's own package environment per-notebook
- The checkmark means it is installed.
- The little cloud icon means it will be installed when ran
"""
# ╔═╡ 7566ebff-2171-4054-b156-42eccf335b86
begin
workouts = CSV.read("workouts.csv", DataFrame);
metrics = CSV.read("metrics.csv", DataFrame);
# Start with some average time in each stage. Timestamp should be in a more usable
# format.
metrics.ParsedTimestamp = DateTime.(metrics.Timestamp, dateformat"y-m-d H:M:S")
# Equivalent: metrics[:ParsedTimestamp], metrics[:, :ParsedTimestamp]
describe(metrics)
end
# ╔═╡ 3c54b5e3-2f95-4e38-89cf-944f15b21ff4
md"""
## First Steps
- Usually a good idea to describe the dataframe that you have
- Peform any cleaning needed
## New Columns
- Defined using the `.` format
- Uses broadcast over the existing Timestamp column that is a string
- Better for plotting and programmatic usage.
"""
# ╔═╡ 9c2dfaba-c7a6-49d3-ad79-ca1ff971fe38
md"""
## Sleep During Training
- How well did I sleep during training?
- Was I consistent in my sleep?
- Hypothesis, probably not
"""
# ╔═╡ ce659d96-c1f9-4556-9171-d2b27604b4ba
begin
# Sleep data, with outliers trimmed (didn't wear my watch)
row_selector = (metrics.Type .== "Sleep Hours") .&& (metrics.Value .< 9.) .&& (metrics.Value .> 6)
sleep_hours = metrics[row_selector, [:Value, :ParsedTimestamp]]
# Plot it
scatter(sleep_hours.ParsedTimestamp, sleep_hours.Value, xlabel="Date", ylabel="Hours Slept", title="Sleep over Training, Parent Edition")
end
# ╔═╡ eb8d8089-fc7a-460c-808a-fa97e49c186f
md"""
## Answer
- No, I was not consistent in my sleep at all.
- Probably due to toddler
- Or potty training
- Or having aching legs...
- I digress.
### Follow up
Were my averages week to week consistent?
"""
# ╔═╡ a04217e3-d037-4fcb-94db-0ba13f685075
begin
weeks = length(sleep_hours.Value) ÷ 7
week_sleeps = [sleep_hours.Value[i:min(i+7, length(sleep_hours.Value))] for i ∈ 1:7:length(sleep_hours.Value)]
mean_week_sleeps = mean.(week_sleeps)
scatter(1:length(mean_week_sleeps), mean_week_sleeps, ylims=(6.0, 8.5), xticks=1:1:length(mean_week_sleeps), ylabel="Hours Slept", xlabel="Weeks", title="Mean Sleep Per Week", legend=false)
end
# ╔═╡ 7ce2f271-633a-4bdf-9306-49ec2fd42271
md"""
## Answer
- Yes, my averages week to week were consistent.
- Between 7-7.5 hours of sleep usually.
## Methodology
- Creates segments of max length 7 sleep observations
- Takes the mean of each segment
- Plot those means
## Next Up
- Reading my workout data
"""
# ╔═╡ 342be831-5e47-4c7c-a4fd-0b442ea88fbf
md"""
## Reading Workout Data
- Data is stored in .FIT files
- I failed to write the Garmin FIT SDK in time for Julia
- Use PyCall and Garmin's Python SDK!
"""
# ╔═╡ dfe39216-9c18-4149-9db9-cbd2f6bcf632
begin
# Install the Garmin SDK into our Notebook environment.
Conda.pip_interop(true)
Conda.pip("install", "/Users/jacobwindle/Downloads/FitSDKRelease_21.105.00/py")
end
# ╔═╡ d94c3d18-27c1-498d-91fb-5a8e6dd6b585
md"""
## Python Interop
- Useful because I failed at writing the FIT SDK
- Use Pip interop in this case, `install` with local filepath
- Now time to read all the FIT files
"""
# ╔═╡ 7cb0daaf-6701-48c8-88ee-49a78d46d0a8
begin
@pyimport garmin_fit_sdk
fit_files = readdir("fit_files"; join=true)
function decode_fit_file(fp::AbstractString)::Tuple{Any,Any}
stream = garmin_fit_sdk.Stream.from_file(fp)
decoder = garmin_fit_sdk.Decoder(stream)
decoder.read()
end
decoded_fit_files = [dc[1] for dc in decode_fit_file.(fit_files)]
end
# ╔═╡ 065c7811-0203-44fd-bb88-49946d674fd8
md"""
## Reading the FIT files
- Function decode_fit_file will use the Garmin Python SDK to read fit file
- Use combo listcomp and broadcast to decode all files
## Getting my Heartrate Data
- From clicking through data, all heartrate information is in `record_mesgs`
- Convert `record_mesgs` into a dataframe for each date
"""
# ╔═╡ 39a46471-663e-4395-b4bd-2380932d7189
begin
decoded_fit_files[1]["record_mesgs"]
function extract_record_and_timestamp(fit_file::Dict{Any, Any})::Tuple{DateTime, Vector{Dict{Any, Any}}}
ts = DateTime(fit_file["activity_mesgs"][1]["timestamp"])
records = filter(x -> x isa AbstractString)
ts, fit_file["record_mesgs"]
end
extract_record_and_timestamp.(decoded_fit_files)
end
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uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.10.1"
[[deps.Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
version = "1.10.1"
[[deps.TensorCore]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6"
uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50"
version = "0.1.1"
[[deps.Test]]
deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[[deps.TranscodingStreams]]
deps = ["Random", "Test"]
git-tree-sha1 = "94f38103c984f89cf77c402f2a68dbd870f8165f"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.9.11"
[[deps.URIs]]
git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a"
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
version = "1.4.2"
[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
[[deps.UnicodeFun]]
deps = ["REPL"]
git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf"
uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1"
version = "0.4.1"
[[deps.Unzip]]
git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78"
uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"
version = "0.2.0"
[[deps.VersionParsing]]
git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868"
uuid = "81def892-9a0e-5fdd-b105-ffc91e053289"
version = "1.3.0"
[[deps.Wayland_jll]]
deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"]
git-tree-sha1 = "ed8d92d9774b077c53e1da50fd81a36af3744c1c"
uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89"
version = "1.21.0+0"
[[deps.Wayland_protocols_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da"
uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91"
version = "1.25.0+0"
[[deps.WeakRefStrings]]
deps = ["DataAPI", "InlineStrings", "Parsers"]
git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23"
uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5"
version = "1.4.2"
[[deps.WorkerUtilities]]
git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7"
uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60"
version = "1.6.1"
[[deps.XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.10.3+0"
[[deps.XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]
git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.34+0"
[[deps.Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527"
uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc"
version = "1.6.9+4"
[[deps.Xorg_libXau_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e"
uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec"
version = "1.0.9+4"
[[deps.Xorg_libXcursor_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"]
git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd"
uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724"
version = "1.2.0+4"
[[deps.Xorg_libXdmcp_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4"
uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05"
version = "1.1.3+4"
[[deps.Xorg_libXext_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"]
git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3"
uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3"
version = "1.3.4+4"
[[deps.Xorg_libXfixes_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"]
git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4"
uuid = "d091e8ba-531a-589c-9de9-94069b037ed8"
version = "5.0.3+4"
[[deps.Xorg_libXi_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"]
git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246"
uuid = "a51aa0fd-4e3c-5386-b890-e753decda492"
version = "1.7.10+4"
[[deps.Xorg_libXinerama_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"]
git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123"
uuid = "d1454406-59df-5ea1-beac-c340f2130bc3"
version = "1.1.4+4"
[[deps.Xorg_libXrandr_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"]
git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631"
uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484"
version = "1.5.2+4"
[[deps.Xorg_libXrender_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"]
git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96"
uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa"
version = "0.9.10+4"
[[deps.Xorg_libpthread_stubs_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb"
uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74"
version = "0.1.0+3"
[[deps.Xorg_libxcb_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"]
git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6"
uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b"
version = "1.13.0+3"
[[deps.Xorg_libxkbfile_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"]
git-tree-sha1 = "926af861744212db0eb001d9e40b5d16292080b2"
uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a"
version = "1.1.0+4"
[[deps.Xorg_xcb_util_image_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97"
uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b"
version = "0.4.0+1"
[[deps.Xorg_xcb_util_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"]
git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1"
uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5"
version = "0.4.0+1"
[[deps.Xorg_xcb_util_keysyms_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00"
uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7"
version = "0.4.0+1"
[[deps.Xorg_xcb_util_renderutil_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e"
uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e"
version = "0.3.9+1"
[[deps.Xorg_xcb_util_wm_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67"
uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361"
version = "0.4.1+1"
[[deps.Xorg_xkbcomp_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxkbfile_jll"]
git-tree-sha1 = "4bcbf660f6c2e714f87e960a171b119d06ee163b"
uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4"
version = "1.4.2+4"
[[deps.Xorg_xkeyboard_config_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xkbcomp_jll"]
git-tree-sha1 = "5c8424f8a67c3f2209646d4425f3d415fee5931d"
uuid = "33bec58e-1273-512f-9401-5d533626f822"
version = "2.27.0+4"
[[deps.Xorg_xtrans_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845"
uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.4.0+3"
[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.12+3"
[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.5+0"
[[deps.fzf_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
version = "0.29.0+0"
[[deps.libaom_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4"
uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b"
version = "3.4.0+0"
[[deps.libass_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47"
uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
version = "0.15.1+0"
[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.1.1+0"
[[deps.libfdk_aac_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55"
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
version = "2.0.2+0"
[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.38+0"
[[deps.libvorbis_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c"
uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
version = "1.3.7+1"
[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.48.0+0"
[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+0"
[[deps.x264_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2"
uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
version = "2021.5.5+0"
[[deps.x265_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9"
uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
version = "3.5.0+0"
[[deps.xkbcommon_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"]
git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a"
uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
version = "1.4.1+0"
"""
# ╔═╡ Cell order:
# ╠═9fee4ffb-83c0-46df-b84a-ef902a5e99ab
# ╠═c649e044-d418-11ed-16c7-7171aa17ea3b
# ╠═8bf03425-5697-4817-93fa-9519d9f184bd
# ╠═7566ebff-2171-4054-b156-42eccf335b86
# ╠═3c54b5e3-2f95-4e38-89cf-944f15b21ff4
# ╠═9c2dfaba-c7a6-49d3-ad79-ca1ff971fe38
# ╠═ce659d96-c1f9-4556-9171-d2b27604b4ba
# ╠═eb8d8089-fc7a-460c-808a-fa97e49c186f
# ╠═a04217e3-d037-4fcb-94db-0ba13f685075
# ╠═7ce2f271-633a-4bdf-9306-49ec2fd42271
# ╠═342be831-5e47-4c7c-a4fd-0b442ea88fbf
# ╠═dfe39216-9c18-4149-9db9-cbd2f6bcf632
# ╠═d94c3d18-27c1-498d-91fb-5a8e6dd6b585
# ╠═7cb0daaf-6701-48c8-88ee-49a78d46d0a8
# ╠═065c7811-0203-44fd-bb88-49946d674fd8
# ╠═39a46471-663e-4395-b4bd-2380932d7189
# ╟─00000000-0000-0000-0000-000000000001
# ╟─00000000-0000-0000-0000-000000000002
Reference in New Issue Copy Permalink